PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013034
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family LBD
Protein Properties Length: 177aa    MW: 19302.8 Da    PI: 4.8789
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32105735PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260798.1e-25799198
     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98
               +C aCk+ ++      v+ pyf+ +q + +fa+vhk+FGasn +kll +lp ++r++a+ s++yeA ar+  PvyG+v+ i++l+qq++ l++e+++l 
  Lsa013034  7 SCGACKFREE-----GVFTPYFCYSQgADHFAAVHKIFGASNASKLLMKLPLQDRSEAAISICYEALARV-HPVYGCVAQIFALEQQVAGLQEEIDQLS 99
               6999999766.....9********9989*****************************************8.5**********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.9021102IPR004883Lateral organ boundaries, LOB
PfamPF031958.5E-23798IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MTGASFSCGA CKFREEGVFT PYFCYSQGAD HFAAVHKIFG ASNASKLLMK LPLQDRSEAA  60
ISICYEALAR VHPVYGCVAQ IFALEQQVAG LQEEIDQLSN YMTYVSFGLP NCMTYVSSEI  120
NGTSISDHLN QQTPPLFAAP QASSPSLAIL DGQNSHSHSL LDHPLMESFE FHGELIT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009351469.16e-46PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9M2J77e-36LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A124SGN42e-44A0A124SGN4_CYNCS; Lateral organ boundaries domain-containing protein
TrEMBLB9SDY81e-43B9SDY8_RICCO; LOB domain-containing protein, putative
STRINGVIT_13s0019g02060.t013e-42(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.14e-37lateral organ boundaries-domain 29